# palmwtc

**Automated whole-tree chamber workflow for oil-palm ecophysiology.**

`palmwtc` is the data-processing and analysis pipeline for the first
automated whole-tree chamber (WTC) sized to enclose individual oil palm trees,
deployed at the LIBZ field site (Riau, Indonesia) and instrumented with
LI-COR LI-850 gas analyzers.

It transforms raw chamber cycles into validated CO₂ and H₂O fluxes,
applies multi-stage quality control (rules + breakpoints + ML outliers),
and produces inputs for the XPalm digital-twin calibration pipeline.

```{tableofcontents}
```

## Quick links

- [Quickstart](quickstart.md) — install, run on the bundled sample, see results
- [Tutorials](tutorials/index.md) — step-by-step walkthroughs of each pipeline stage
- [Science Reference](science/index.md) — methods, validation thresholds, literature
- [API Reference](api/index.md) — auto-generated from docstrings

## Cite

If you use `palmwtc` in scientific work, please cite the Zenodo DOI for the
release you used. See the [Citation File](https://github.com/adisapoetro/palmwtc/blob/main/CITATION.cff).